Difference Between Lysosome and Peroxisome

Main Difference – Lysosome vs Peroxisome

Lysosome and peroxisome are two distinct types of single-membrane compartments found inside the cell. Lysosomes are found only in animals while peroxisomes are found in all eukaryotes. Lysosomes are large in size but peroxisomes are comparatively small. Both lysosomes and peroxisomes are enzyme compartments. The main difference between lysosome and peroxisome is that lysosome contains an array of degradative enzymes, which break down almost all the biological polymers inside the cell whereas peroxisome contains enzymes, which carry out oxidation reactions and break down metabolic hydrogen peroxide

This article explains, 

1. What is Lysosome
      – Characteristics, Structure, Function
2. What is Peroxisome
      – Characteristics, Structure, Function
3. What is the difference between Lysosome and Peroxisome

Difference Between Lysosome and Peroxisome- Comparison Summary (1)

What is Lysosome

A lysosome is a membrane-enclosed organelle inside the cell, which contains enzymes for the degradation of biological polymers like proteins, polysaccharides, lipids and nucleic acids. It is a spherical-shaped vesicle, functioning as the cell’s degradative system of both biological polymers and obsolete components inside the cytoplasm. Lysosomes are comparatively large in size; the size varies from 0.1-1.2 µm depending on the materials taken up for the digestion. They are composed of membrane proteins and lysosomal lumen enzymes. Lysosomal lumen contains about 50 different digestive enzymes, which are produced in the rough endoplasmic reticulum and exported into the Golgi apparatus. Small vesicles, containing the enzymes released from the Golgi, are later fused to form a large vesicle. The enzymes destined in the lysosomes are tagged with mannose 6-phosphate in the endoplasmic reticulum.

Hydrolytic enzymes in the lysosome are acid hydrolases, requiring acidic pH, ranging from 4.5 to 5.0 for their optimal activity. Protons (H+ ions) are pumped into the lumen of the lysosome in order to maintain the acidic pH as it is. The pH in the cytosol is usually 7.2. Required acidic pH by the hydrolytic enzymes ensures that hydrolytic reactions do not occur in the cytosol. Genetic defects in the genes, which encode the lysosomal digestive enzymes, lead to the accumulation of a particular unwanted substance in the cytosol, causing lysosomal storage diseases like Gaucher’s disease, cardiovascular diseases, neurodegenerative disorders and several cancers. A lysosome in a cell is shown in figure 1.

Main Difference - Lysosome vs Peroxisome

Figure 1: Lysosome

Function of Lysosome

The hydrolytic enzymes in the lysosomes break down materials like biomolecules, exhausted organelles and other unwanted materials in the cytoplasm by engulfing them into the lysosome. Lysosomes are formed during endocytosis, engulfing materials from the outside of the cell. The major class of hydrolytic enzymes is cathepsins. The lysosome is considered to act as the cells’ waste disposal system. In addition to unwanted polymer degradation, lysosomes exhibit some other functions. They fuse with other organelles to digest cellular debris or large structures in the process called autophagy. Moreover, lysosomes along with phagosomes are capable of clearing out the damaged structures including bacteria and viruses by a process called phagocytosis. Besides degradation, lysosomes are involved in secretion, cell signaling, plasma membrane repair, and energy metabolism.

What is a Peroxisome

A peroxisome is a membrane-enclosed organelle found in all eukaryotes, containing enzymes to break down metabolic hydrogen peroxides. Though peroxisomes are morphologically similar to lysosomes, they are comparatively small. The diameter of a peroxisome is 0.1 –1.0 µm. Proteins required by peroxisomes are synthesized by free ribosomes and obtained from the cytosol. These proteins are tagged with peroxisomal targeting signal (PTS) in the cytosol. The C terminus of the target protein is tagged with PTS1 and the N terminus with PTS2 and are transported into peroxisomes by the cargo proteins, Pex5 and Pex7, respectively. At least 50 distinct peroxins are transported into the peroxisome. A peroxisome in the cell is shown in figure 2.

Difference Between Lysosome and Peroxisome

Figure 2: Peroxisome

Function of Peroxisome

Enzymes in peroxisomes are involved in catalyzing various biochemical pathways in the cell. The main function of peroxisomes is to carryout oxidation reactions, which produce hydrogen peroxide. Since hydrogen peroxides are toxic to the cell, peroxisomes itself contains enzymes called catalazes, which decompose hydrogen peroxide into water or use it to oxidize another organic compound. Substrates like fatty acids, amino acids and uric acid are broken down by the oxidative enzymes in the peroxisomes. Metabolic energy is generated by the oxidation of fatty acids. 

Peroxisomes are also involved in lipid biosynthesis by synthesizing cholesterol and dolichol inside the peroxisome. Peroxisomes in the liver synthesize bile acids. Plasmalogens, which are a class of phospholipids, are involved in the formation of membrane components in the cell. They are also synthesized by the enzymes in peroxisomes. Peroxisomes in plant seeds convert fatty acids into carbohydrates. In leaves, peroxisomes are involved in the photorespiration, which metabolizes the side products of photosynthesis.

Difference Between Lysosome and Peroxisome

Main Function

Lysosome: Lysosomes break down biological polymers like proteins and polysaccharides.

Peroxisome: Peroxisomes oxidize organic compounds, breaking down metabolic hydrogen peroxides.


Lysosome: Lysosomes consists of degradative enzymes.

Peroxisome: Peroxisomes consist of oxidative enzymes.


Lysosome: Lysosomes are responsible for the digestion in the cell.

Peroxisome: Peroxisomes are responsible for the protection of the cell against metabolic hydrogen peroxide.


Lysosome: Lysosomes are only found in animals.

Peroxisome: Peroxisomes are found in all eukaryotes.


Lysosome: Lysosomes are derived from either Golgi apparatus or endoplasmic reticulum.

Peroxisome: Peroxisomes are derived from the endoplasmic reticulum and are capable of replicating by themselves.


Lysosome: Lysosomes are comparatively large in size.

Peroxisome: Peroxisomes are small.

Signal Sequence of the Target Proteins

Lysosome: The proteins destined in the lysosomes are tagged with mannose 6-phosphate.

Peroxisome: The proteins destined in the peroxisomes are tagged with peroxisomal targeting signal (PTS).

Other Functions

Lysosome: Lysosomes are involved in endocytosis, autophagy, and phagocytosis.

Peroxisome: Peroxisomes are involved in biosynthesis of lipids and photorespiration.

Energy Generation

Lysosome: Degradative reactions in the lysosomes do not generate energy.

Peroxisome: Oxidative reactions in peroxisomes generate ATP energy.


Lysosome and peroxisome are two organelles, containing enzymes that catalyze various biochemical processes in the cell. The main difference between lysosome and peroxisome is the enzymes they contain and their functions. Lysosomes contain enzymes, which degrade biopolymers like proteins, lipids, polysaccharides and nucleic acids. Peroxisomes contain enzymes for the oxidation of organic compounds, generation of metabolic energy. Both lysosomes and peroxisomes are structurally similar, but varies in size. Lysosomes are usually large compared to peroxisomes and their size varies with the materials, which are uptaken into the organelle. Both organelles are enclosed by a single membrane.

1. Cooper, Geoffrey M. “Lysosomes.” The Cell: A Molecular Approach. 2nd edition. U.S. National Library of Medicine, 01 Jan. 1970. Web. 22 Mar. 2017.
2. Alberts, Bruce. “Peroxisomes.” Molecular Biology of the Cell. 4th edition. U.S. National Library of Medicine, 01 Jan. 1970. Web. 22 Mar. 2017.
3. Cooper, Geoffrey M. “Peroxisomes.” The Cell: A Molecular Approach. 2nd edition. U.S. National Library of Medicine, 01 Jan. 1970. Web. 22 Mar. 2017.

Image Courtesy:
1. “Lysosome21″By Gevictor – Own work via
2. “OSC Microbio 03 04 Peroxisome”By CNX OpenStax –  via

About the Author: Lakna

Lakna, a graduate in Molecular Biology & Biochemistry, is a Molecular Biologist and has a broad and keen interest in the discovery of nature related things

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